lmiller1990/bioinfomatics

Various code I am writing as I learn bioinformatics

Python

I am learning bioinformatics, this is the code I am writing.

Requirements

Python 3

Install

pip install -r requirements.txt

Lint

black *.py

Algorithms

Needleman Wunsch

# Basic
python needleman_wunsch.py "GTCGACGCA" "GGATACA"

# Custom weights
python needleman_wunsch.py "GTCGACGCA" "GGATACA" --gap -1 --mismatch 0 --match 3