Docker container with tools for bioinfortmatics
Author: Boris Belyaev belbor1@gmail.com
In dockerfile you find container based on ubuntu 18.04, which includes speсial bioinformatic programs: samtools, biobambam2 and also requaired libraries and tools (htslib, libdeflate, libmaus2).
You must have Docker to build and run image.
To build image on your host you should call:
docker build https://github.com/localghost32/bioinformatics_tools.git#master
Dockerfile will be downloaded from master branch of repository:
https://github.com/localghost32/bioinformatics_tools.git
You can choose tag for image during building. It will create convenience:
docker build https://github.com/localghost32/bioinformatics_tools.git#master -t <your_tag>
For more information see:
docker build --help
To run container use:
docker run -it <container_id or your_tag>