In this repository are shown basical bio semantic-web technology examples using R, XSLT, SPARQL and Apache Jena.
Is this document are represented some technologies for modelling and mapping a Knowledge Base from XSLT to RDF on a KEGG metabolic network. Are described the R libraries to import and update an RDF\OWL, changing the semantic formats.
Bio semantics on chemical compunds (OpenTox ontology), R and SPRQL.
It is shown an example of interrogation of an ontology web service. Then, it is shown an example of data-integration with SPARQL and triples stores for recognising enantiomers across their simplified molecular-input line-entry system (SMILES).
Bio semantics on UniProt proteins with R and SPRQL.
Finally it is shown an example of a SPARQL endpoint for building a new model through the “construct” command.
Please follow the PDF documentation and its relative references
The source code related to the documentation is here (XSLT) and here (R)