lokeshchinthala

lokeshchinthala's Stars

• BIDS-Xu-Lab/Biomedical-NLP-Benchmarks

  Benchmark Datasets for BioNLP Tasks

  Language:Python101

• apache/ctakes

  Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

  Language:Java6314

• BCHSI/philter-deidstable1_mirror

  UCSF Philter for UC

  Language:Python122

• explosion/spacy-llm

  🦙 Integrating LLMs into structured NLP pipelines

  Language:Python1.2k94

• medspacy/medspacy

  Library for clinical NLP with spaCy.

  Language:Jupyter Notebook55595

• rootstrap/ctakes

  cTAKES - instructions and example

  Language:Dockerfile52

• uf-hobi-informatics-lab/ClinicalTransformerRelationExtraction

  A project for developing transformer-based models for clinical relation extraction

  Language:Python12723

• doccano/doccano

  Open source annotation tool for machine learning practitioners.

  Language:Python9.9k1.8k

• som-shahlab/ehrshot-benchmark

  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

  Language:Jupyter Notebook16116

• mitre/IMAC

  Ground Truth Adjudication Tool

  Language:Python85

• BCHSI/philter-ucsf

  Open source clinical text de-identification

  Language:Python12552

• AIM-Harvard/Eso_alpha

  Deep Learning-Based Natural Language Processing to Automate Esophagitis Severity Grading from the Electronic Health Records | Paper: https://arxiv.org/pdf/2303.13722.pdf

  Language:Python3

• Lybarger/sdoh_extraction

  Language:Python172

• Machine-Learning-for-Medical-Language/cnlp_transformers

  Transformers for Clinical NLP

  Language:Python2417

• AIM-Harvard/SDoH

  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41746-023-00970-0

  Language:Python437

• microsoft/CromwellOnAzure

  Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure

  Language:C#13657

• OHDSI/OHDSIonAWS

  Automation code and documentation for standing up the OHDSI toolstack in an AWS environment

  Language:Shell7333

• OHDSI/NLPTools

  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis

  Language:Java3214

• nextgenhealthcare/connect

  The swiss army knife of healthcare integration.

  Language:Java995345

• Jays-code-collection/HMMs_Stock_Market

  Contains all code related to using HMMs to predict stock market prices.

  Language:Python25759

• jasebell/mlbook

  Example code for the Wiley book "Machine Learning - Hands On for Developers and Technical Professionals"

  Language:Java6862

• FHIR/fhir.js

  JavaScript client for FHIR

  Language:JavaScript429137