lonelyjoeparker
Bioinformatics (evolutionary, metagenomics + pop gen analyses) and music programmer with a few webapps thrown in.
Southampton University / Locum lecturer / Sotones / Freelance consultingLondon
Pinned Repositories
befi-bats-gui
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
convergence-utils-sandbox
Sandbox for genomic convergent evolution detection utils
cutter
A Qt and C++ GUI for radare2 reverse engineering framework
databmstdr
Data sets and additional useful functions for modelling spatio-temporal data
dotPlotly-issue-18
Generate an interactive dot plot from mummer or minimap alignments - fixes issue 18
hiv-hadpack
Automatically exported from code.google.com/p/hiv-hadpack
oddjects-sandbox
Sandbox for odd projects, mainly R / Python and mainly bioinformatics or spatial/policy social data
qmul-genome-convergence-pipeline
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
QMUL-MSc-BIO782P-stats-bioinfo
Labs content for 2017 & 2018 QMUL MSc Bioinformatics BIO782P (Stats & bioinformatics) module
real-time-phylogenomics
A sandbox and development repo for projects in real-time phylogenomics application development
lonelyjoeparker's Repositories
lonelyjoeparker/befi-bats-gui
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
lonelyjoeparker/real-time-phylogenomics
A sandbox and development repo for projects in real-time phylogenomics application development
lonelyjoeparker/QMUL-MSc-BIO782P-stats-bioinfo
Labs content for 2017 & 2018 QMUL MSc Bioinformatics BIO782P (Stats & bioinformatics) module
lonelyjoeparker/qmul-genome-convergence-pipeline
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
lonelyjoeparker/oddjects-sandbox
Sandbox for odd projects, mainly R / Python and mainly bioinformatics or spatial/policy social data
lonelyjoeparker/convergence-utils-sandbox
Sandbox for genomic convergent evolution detection utils
lonelyjoeparker/cutter
A Qt and C++ GUI for radare2 reverse engineering framework
lonelyjoeparker/databmstdr
Data sets and additional useful functions for modelling spatio-temporal data
lonelyjoeparker/dotPlotly-issue-18
Generate an interactive dot plot from mummer or minimap alignments - fixes issue 18
lonelyjoeparker/hiv-hadpack
Automatically exported from code.google.com/p/hiv-hadpack
lonelyjoeparker/lonelyjoeparker.github.io
Build a Jekyll blog in minutes, without touching the command line.
lonelyjoeparker/makeyourownneuralnetwork
Code for the Make Your Own Neural Network book
lonelyjoeparker/ml-inference-sandbox
Automatically exported from code.google.com/p/ml-inference-sandbox
lonelyjoeparker/MSc-phylogenetics-lab
Collection of data and scripts used in a 3-hour phylogenetics introductory lab for the Kew/QMUL MSc in plant-and-fungal-taxonomy-diversity-and-conservation
lonelyjoeparker/pi_biolinux_cluster
lonelyjoeparker/poretools
a toolkit for working with Oxford nanopore data
lonelyjoeparker/Spoon-Knife
This repo is for demonstration purposes only.
lonelyjoeparker/standard-RAxML
lonelyjoeparker/teaspoon
A package for sequence analysis of serially-sampled populations