Pinned Repositories
annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk
awesome-multi-omics
List of software packages for multi-omics analysis
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
DTI-datasets
GCNMDA
Graph-Neural-Network-Papers
Graph Neural Network Paper List
PT-GNN
pygcn
Graph Convolutional Networks in PyTorch
SpatialBenchmarking
SPROD
SPROD: Spatial expression profiling de-noising
longyahui's Repositories
longyahui/GCNMDA
longyahui/PT-GNN
longyahui/Graph-Neural-Network-Papers
Graph Neural Network Paper List
longyahui/SpatialBenchmarking
longyahui/SPROD
SPROD: Spatial expression profiling de-noising
longyahui/annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk
longyahui/awesome-multi-omics
List of software packages for multi-omics analysis
longyahui/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
longyahui/CG3
This is the repository for the AAAI 21 paper [Contrastive and Generative Graph Convolutional Networks for Graph-based Semi-Supervised Learning].
longyahui/cloob
longyahui/dance
DANCE: A Deep Learning Library for Single-Cell Analysis
longyahui/Entity_Alignment_Papers
Must-read papers on entity alignment published in recent years
longyahui/graph-based-deep-learning-literature
links to conference publications in graph-based deep learning
longyahui/graph-prediction-with-fused-gromov-wasserstein
Python implementation of the supervised graph prediction method proposed in http://arxiv.org/abs/2202.03813 using PyTorch library and POT library (Python Optimal Transport).
longyahui/LearnPython
Some codes in the process of learning Python language.
longyahui/MCGC
longyahui/POT
POT : Python Optimal Transport
longyahui/pyGAT
Pytorch implementation of the Graph Attention Network model by Veličković et. al (2017, https://arxiv.org/abs/1710.10903)
longyahui/RNA-Seq-and-ATAC-Seq-mapping
longyahui/scanpy
Single-cell analysis in Python. Scales to >1M cells.
longyahui/SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
longyahui/SpaRx
Elucidate spatial heterogeneity of drug sensitivity for personalized treatment
longyahui/SpatialGlue_Tutorial
longyahui/STAGATE
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
longyahui/STAGATE_Tutorials
longyahui/STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
longyahui/SuperGlue-pytorch
[SuperGlue: Learning Feature Matching with Graph Neural Networks] This repo includes PyTorch code for training the SuperGlue matching network on top of SIFT keypoints and descriptors.
longyahui/awesome-foundation-model-single-cell-papers
longyahui/Home
longyahui/vit-pytorch
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch