Pinned Repositories
DeepSequence
A generative latent variable model for biological sequence families.
devguide
The Python developer's guide
docs
TensorFlow documentation
EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
ProteinGym
Official repository for the ProteinGym benchmarks
pytorch-chemicalvae
EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
ProteinGym
Official repository for the ProteinGym benchmarks
loodvn's Repositories
loodvn/pytorch-chemicalvae
loodvn/DeepSequence
A generative latent variable model for biological sequence families.
loodvn/devguide
The Python developer's guide
loodvn/docs
TensorFlow documentation
loodvn/drift
TODO
loodvn/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
loodvn/EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
loodvn/gat-pytorch
Reproducing Graph Attention Networks by Velickovic et al.
loodvn/guillaumegenthial.github.io
loodvn/hypothesis
Hypothesis is a powerful, flexible, and easy to use library for property-based testing.
loodvn/ProteinGym
Official repository for the ProteinGym benchmarks
loodvn/iclr-blog-track.github.io
loodvn/jupyter-o2
Run Jupyter on Orchestra 2
loodvn/just-pandas-things
An ongoing list of pandas quirks
loodvn/lifelines
Survival analysis in Python
loodvn/lightning-bolts
Toolbox of models, callbacks, and datasets for AI/ML researchers.
loodvn/lightning-hydra-template
PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡
loodvn/loodvn.github.io
Lood van Niekerk website
loodvn/metrics
Machine learning metrics for distributed, scalable PyTorch applications.
loodvn/notes
Course notes
loodvn/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
loodvn/pexpect
A Python module for controlling interactive programs in a pseudo-terminal
loodvn/popEVE
loodvn/python3statement.github.io
loodvn/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
loodvn/sagemaker-containers
This support code is used for making machine learning frameworks (e.g. MXNet, TensorFlow) run on Amazon SageMaker.
loodvn/svcca
loodvn/tensorboard
TensorFlow's Visualization Toolkit
loodvn/tensorflow
An Open Source Machine Learning Framework for Everyone
loodvn/Tranception
Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"