Pinned Repositories
BDA-index
Text Indexing for Long Patterns
CNEFinder
CNEFinder: Finding Conserved Non-coding Elements in Genomes
dbFLASM
dbFLASM: Fixed length approximate string matching using a De Bruijn sequence
IsoXpressor
A tool to assess transcriptional activity within isochores
MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
PLCP
Longest Common Prefixes with k-mismatches
rrBDA-index
Text Indexing for Long Patterns
Seedability
Seedability: A tool to determine parameters t (shared number of seeds) and k (seed length) between a set of reads or between a reference and set of reads.
SMART
SMART: Supermaximal Approximate Repeats Tool
SSA
Computes the sparse suffix and LCP array.
lorrainea's Repositories
lorrainea/MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
lorrainea/CNEFinder
CNEFinder: Finding Conserved Non-coding Elements in Genomes
lorrainea/BDA-index
Text Indexing for Long Patterns
lorrainea/SMART
SMART: Supermaximal Approximate Repeats Tool
lorrainea/PLCP
Longest Common Prefixes with k-mismatches
lorrainea/SSA
Computes the sparse suffix and LCP array.
lorrainea/dbFLASM
dbFLASM: Fixed length approximate string matching using a De Bruijn sequence
lorrainea/IsoXpressor
A tool to assess transcriptional activity within isochores
lorrainea/rrBDA-index
Text Indexing for Long Patterns
lorrainea/Seedability
Seedability: A tool to determine parameters t (shared number of seeds) and k (seed length) between a set of reads or between a reference and set of reads.
lorrainea/Chords
lorrainea/hCED
hCED: heuristic for Cyclic Edit Distance computation