/undiagnosed_fraction_estimation

Evaluation of the number of undiagnosed infected in an outbreak using source of infection measurements

Primary LanguagePythonMIT LicenseMIT

undiagnosed_fraction_estimation

Evaluation of the number of undiagnosed infected in an outbreak using source of infection measurements

Akiva B. Melka and Yoram Louzoun

Department of Mathematics, Bar-Ilan University, Ramat Gan 52900, Israel Gonda Brain Research Center, Bar-Ilan University, Ramat Gan 52900, Israel Corresponding author: louzouy@math.biu.ac.il

ABSTRACT In times of outbreaks, an essential requirement for better monitoring is the evaluation of the number of undiagnosed infected individuals. An accurate estimate of this fraction is crucial for the assessment of the situation and the establishment of protective measures. In most current studies using epidemics models, the total number of infected is either approximated by the number of diagnosed individuals or is dependent on the model parameters and assumptions, which are often debated. We here study the relationship between the fraction of diagnosed infected out of all infected, and the fraction of infected with known contaminator out of all diagnosed infected. We show that those two are approximately the same in exponential models and across most models currently used in the study of epidemics, independently of the model parameters. As an application, we compute an estimate of the effective number of infected by the SARS-CoV-2 virus in various countries.

Datasets for countries were too heavy to upload. A link to the databases with csv files is available in the txt file "Links to datasets".