Pinned Repositories
adventures-in-ml-code
This repository holds all the code for the site http://www.adventuresinmachinelearning.com
AnNet
Analysis of Networks
BioNAR
Biological Network Analysis in R
lptolik.github.io
R4Kappa
Set of packages designed to bridge kappa language modelling and bioinformatics.
RuleDB0
Compositional rule model database
SBMLR
SpatialKappa
An implementation of spatial language extensions to Kappa
SPKappaR
R companion to SPKappa simulator
TVTB
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/TVTB.html Contributions: https://github.com/kevinrue/TVTB. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=TVTB or https://github.com/kevinrue/TVTB/issues.
lptolik's Repositories
lptolik/BioNAR
Biological Network Analysis in R
lptolik/SpatialKappa
An implementation of spatial language extensions to Kappa
lptolik/AnNet
Analysis of Networks
lptolik/lptolik.github.io
lptolik/ShapleyDataR
lptolik/synaptome.db
lptolik/bioc_hub_server_docker
A dockerized version of the Bioconductor Hub Server
lptolik/biocthis
Automate package and project setup for Bioconductor packages
lptolik/BioNAR_paper_supplementary
Case studies and supplementary materials for BioNAR paper
lptolik/bitnami-docker-dokuwiki
Bitnami Docker Image for DokuWiki
lptolik/CGRtools
CGRs, molecules and reactions manipulation
lptolik/covid19model
Code for modelling estimated deaths and cases for COVID19.
lptolik/DataShapley
Data Shapley: Equitable Valuation of Data for Machine Learning
lptolik/fastshap
Fast approximate Shapley values in R
lptolik/FBA-PRCC
Sensitivity analysis of FBA models
lptolik/FBA-PRCC_paper
Source code and data for the FBA-PRCC paper
lptolik/LLMPromptSelector
lptolik/microbiome-metabolome-curated-data
lptolik/MOFA2
Multi-Omics Factor Analysis
lptolik/obsidian-daily-stats
Plugin to view your daily word count across all notes in your Obsidian.md vault.
lptolik/PhenotypePredictor
Workflow for executing functional annotation and metabolic phenotype assignement to microbial genomes
lptolik/PyNeuron-Toolbox
Some python functions to supplement the NEURON python module
lptolik/resumer
Package for building resumes with R
lptolik/reviewAssembler
R script to prepare review paper
lptolik/scalaBiomeDB
Scala library for filling Neo4j database with biological data.
lptolik/slurm_scripts
scripts to handle asar data with slurm
lptolik/synaptome.data
AnnotationData for Synaptome.DB package
lptolik/uct-srst2
MLST using srst2, implemented in Nextflow
lptolik/Williams-etal-Synaptic-Transport
Code and Supplementary Notes for Williams et al. (2016) "Dendritic trafficking faces physiologically critical speed-precision tradeoffs."
lptolik/YAMP
YAMP: Yet Another Metagenomic Pipeline