lrauschning
Bioinformatician working at the Göke lab at ASTAR GIS. Previously at the Schneeberger lab at LMU and MPIPZ and the Notredame lab at CRG.
GISSingapore
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
configs
Config files used to define parameters specific to compute environments at different Institutions
fastbogosort
Parallelized and efficient implementation of the bogosort algorithm.
hometools
collection of command-line functions used to perform multiple small frequently required analysis
latexdem
Demonstration of a simple worksheet solution and presentation using LaTeX, made for GumbelTalks 2023
MAGUS
Graph Clustering Merger
misc
ultramsatric
multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
msyd
lrauschning's Repositories
lrauschning/latexdem
Demonstration of a simple worksheet solution and presentation using LaTeX, made for GumbelTalks 2023
lrauschning/ultramsatric
lrauschning/bioconda-recipes
Conda recipes for the bioconda channel.
lrauschning/configs
Config files used to define parameters specific to compute environments at different Institutions
lrauschning/fastbogosort
Parallelized and efficient implementation of the bogosort algorithm.
lrauschning/hometools
collection of command-line functions used to perform multiple small frequently required analysis
lrauschning/MAGUS
Graph Clustering Merger
lrauschning/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
lrauschning/misc
lrauschning/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
lrauschning/multi-package-containers
Testing building mulled containers for multi-requirement tools.
lrauschning/multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
lrauschning/nextflow
A DSL for data-driven computational pipelines
lrauschning/nf-test
Simple test framework for Nextflow pipelines
lrauschning/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
lrauschning/simba
Set of mathematical traits to facilitate the use of SIMD-based AoSoA (Array of Struct of Array) storage pattern.
lrauschning/syri
Synteny and Rearrangement Identifier
lrauschning/test-datasets
Test data to be used for automated testing with the nf-core pipelines
lrauschning/upf-calendar-exporter
exports UPF University calendar to google calendar
lrauschning/verkko