/ece228_unet

Primary LanguageJupyter Notebook

ECE 228 Unet For Biomedical Image Segmentation

Lucas Tindall, Max Jiao, Amir Persekian

Environment

  1. Python 3, Pytorch (0.3.1.post3)

Setup

  1. Instal environment requirements
  2. Clone this repo
  3. Download datasets.zip
  4. Unzip datasets.zip

Run

  1. Jupyter notebook for Kaggle Data Science Bowl 2018 can be found at kaggle_nucleus.ipynb
  2. Jupyter notebook for NCMIR mitochondria dataset can be found at ncmir_mito.ipynb
  3. Jupyter notebook for ISBI Challenge 2012 can be found at isbi_2012.ipynb
  4. Jupyter notebook for ISBI Challenge 2013 can be found at isbi_2013.ipynb
  5. Jupyter notebook for EPFL CVLab mitochondria dataset can be found at epfl.ipynb
  6. All of the notebooks have corresponding *.py scripts which can be run from a terminal