A place to collect papers that are related to cell-type annotation in single-cell RNA-sequence experiments Really inspired by Harold Pimentel's deep learning paper list.
Ideally, this will be the basis for a collaborative, open review in the near future, such as the Deep Review.
Contributions are welcome.
Any papers that help answering the question "How do I label my cells in my single-cell RNA-seq analysis?" are within scope.
- CellMeSH: Probabilistic Cell-Type Identification Using Indexed Literature
- Probabilistic gene expression signatures identify cell-types from single cell RNA-seq data
- SciBet as a portable and fast single cell type identifier
- scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
- SCSA: A Cell Type Annotation Tool for Single-Cell RNA-seq Data
- CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing