Pinned Repositories
SIMLR
Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207
LACE
LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudinal experiments. The tool also allows to annotate and retrieve the relevant variants based on user-defined criteria.
TRONCO
Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
revolver
REVOLVER - Repeated Evolution in Cancer
jorvik
'Jorvik' is the codename for the second and latest version of the Gaia Project, used by Italian Red Cross. ISSUES: https://jira.gaia.cri.it/browse/JO
SparseSignatures
Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009119
ambulance-check
A web user interface to speed up the ambulance check
pyTSA
Time Series analysis with pandas
shiny-octo-dubstep
Fractal Image Compression
wonderbot
A tool to automatically deploy staging environments on pull requests
luca-dex's Repositories
luca-dex/pyTSA
Time Series analysis with pandas
luca-dex/ambulance-check
A web user interface to speed up the ambulance check
luca-dex/shiny-octo-dubstep
Fractal Image Compression
luca-dex/wonderbot
A tool to automatically deploy staging environments on pull requests
luca-dex/petulant-ecto-tyrion
roba con matrici e fft
luca-dex/dndscv
dN/dS methods to quantify selection in cancer and somatic evolution
luca-dex/gaia
G.A.I.A. è l'acronimo di "Gestione Avanzata ed Integrata dell'Anagrafica"... [cit. Alfio Musmarra]
luca-dex/markrov-text-generator
A random text generator based on Markrov Chains
luca-dex/partenzaintelligente
partenza intelligente website
luca-dex/random-exercise
luca-dex/SIMLR
Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html. Also see http://biorxiv.org/content/early/2017/03/21/118901 for a description of the software.
luca-dex/unimib-algogen
Alcuni esempi sugli algoritmi genetici realizzati in Python