Pinned Repositories
Caffe2
Clarinet
Electrophysiology time series data analysis
degeneration
Analysis of retinal degeneration literature and predictive modeling
GammaFitting
Image segmentation based on pixel intensity distribution
MosaicAnalysis
Analysis of mosaic distribution for neuronal populations
NIA
Neuron Image Analyzer: Automated and Accurate Extraction of Neuronal Data from Low Quality Images
ObjectFinder
3D object recognition in image volumes
TrachomaFinder
Automatic trachoma identification
VolumeCut
Free-form cutter for volumetric images
wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
lucadellasantina's Repositories
lucadellasantina/ObjectFinder
3D object recognition in image volumes
lucadellasantina/Clarinet
Electrophysiology time series data analysis
lucadellasantina/MosaicAnalysis
Analysis of mosaic distribution for neuronal populations
lucadellasantina/degeneration
Analysis of retinal degeneration literature and predictive modeling
lucadellasantina/GammaFitting
Image segmentation based on pixel intensity distribution
lucadellasantina/VolumeCut
Free-form cutter for volumetric images
lucadellasantina/wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
lucadellasantina/TrachomaFinder
Automatic trachoma identification
lucadellasantina/dotfinder
lucadellasantina/EspionCode
lucadellasantina/IceImarisConnector
IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
lucadellasantina/iso2mesh
iso2mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave
lucadellasantina/JavaTreeWrapper
lucadellasantina/KiloSort
GPU code for spike sorting
lucadellasantina/MaskTools
Toolset for binary mask processing
lucadellasantina/mdCNN
3D Convolutional Neural Network (CNN) for volumetric inputs. Matlab framework supporting 2D and 3D kernels
lucadellasantina/me
Personal profile page
lucadellasantina/OrganoidImageAnalysis
Image analysis for protein content within intracellular compartments of organoids
lucadellasantina/retinal-flattener
Program to flatten retinal image stack using CHaT bands (based on code from Sümbül, U. et al. A genetic and computational approach to structurally classify neuronal types. Nat. Commun. 5:3512 doi: 10.1038/ncomms4512, 2014)
lucadellasantina/sa-labs-analysis
Data analysis toolbox for Multi-electrode patch clamp recordings
lucadellasantina/sa-labs-analysis-core
Matlab based Electrophysiology Data Analysis Framework
lucadellasantina/sa-labs-util
lucadellasantina/simpleclust
Manual spike clustering software for matlab
lucadellasantina/skel2graph3d-matlab
MATLAB code to derive the network graph of a 3D voxel skeleton
lucadellasantina/skeleton3d-matlab
MATLAB code to calculate the 3D skeleton of a binary volume using parallel medial axis thinning
lucadellasantina/Skeletor
Create and manipulate digital skeletons
lucadellasantina/SlicerVolumeClip
3D Slicer extension for clipping volume with surface or ROI box
lucadellasantina/spike-sorting
The repository for taking raw HDF5 multielectrode array recordings and identifying spikes through clustering. Should work on MATLAB versions >=2014a
lucadellasantina/textprogressbar
A text progress bar for Matlab's command line.
lucadellasantina/vertebraClassification
vertebra classification files. Dataset for training the deep net and config files