Pinned Repositories
blissNP
Step-by-step procedure for the analysis of BLISS and sBLISS datasets. For more information:
cellxgene
An interactive explorer for single-cell transcriptomics data
computational_flow_cytometry
CytoPb
For multiplexed imaging (IF, IMC, ...), use of overlap signals to generate cell type maps and interaction signatures.
Cytophenograph
Pipeline for flow cytometry anlaysis
NaCl-enhances-CD8-T-cell-effector-functions-in-cancer-immunotherapy
Integration analysis with Scanpy and scRNAseq TME from blueprint
Preliminary_Data_Cariplo2021
IBD and CRC scRNAseq Integration
SP018_CD8_Galletti_et_al
CD8 stem-like progenitors and fate commitment
SP028_Autoimmunity
SP028 Project
wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches
luglilab's Repositories
luglilab/Cytophenograph
Pipeline for flow cytometry anlaysis
luglilab/NaCl-enhances-CD8-T-cell-effector-functions-in-cancer-immunotherapy
Integration analysis with Scanpy and scRNAseq TME from blueprint
luglilab/Preliminary_Data_Cariplo2021
IBD and CRC scRNAseq Integration
luglilab/SP018_CD8_Galletti_et_al
CD8 stem-like progenitors and fate commitment
luglilab/SP028_Autoimmunity
SP028 Project
luglilab/wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches
luglilab/blissNP
Step-by-step procedure for the analysis of BLISS and sBLISS datasets. For more information:
luglilab/cellxgene
An interactive explorer for single-cell transcriptomics data
luglilab/computational_flow_cytometry
luglilab/CytoPb
For multiplexed imaging (IF, IMC, ...), use of overlap signals to generate cell type maps and interaction signatures.
luglilab/diopy
The single-cell data IO between R and Python(Python version)
luglilab/Hyperion
luglilab/ImcSegmentationPipeline
A pixelclassification based multiplexed image segmentation pipeline
luglilab/Phenograph_LugliLab
luglilab/SP018-scRNAseq-Pelosi
Single cell analysis for Dott.Pelosi
luglilab/Cytophenograph7
luglilab/EndothelialDataset
Integrative multi-omic profiling of cardiac endothelial cells at the single-cell level pressure overload hypertrophy reveals functional heterogeneity and plasticity in heart hypertrophied mice
luglilab/helixbusters
A package for identifying and repairing double-strand breaks in DNA
luglilab/ProjectScripts_Treg_Irf4
RnaSeq Irf4 ko
luglilab/pyflowqc
python package for QC in flow dimensional flowcytometry
luglilab/RASLE_Integration
luglilab/scATACseq_Tcell_Satpathy_Chang
Reanalysis of scATACseq data from Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
luglilab/scRNAHFTol
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luglilab/SP007_Sade_Feldman
Scanpy Analysis of Public Dataset
luglilab/SP012_ChipSeq_script
SP012 ChipSeq
luglilab/SP017_-scRNAseq_tumor_esophagus
luglilab/SP024_DiMitriCrispCas9
Script and files of Project SP024
luglilab/SP039_GBMintegration
Code related to SP039 project. GBM integration of single cell dataset
luglilab/utility
Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR