/rodentConvergence

R Code and data for "Prevalence and patterns of convergent ecomorphological evolution in rodents"

Primary LanguageR

R Code and data for "Prevalence and patterns of convergent ecomorphological evolution in rodents"

Supplementary data and code for reproducing all results and figures

R

This folder contains R code for all data analysis and visualization. File names group different stages together (pre-processing, analysis, post-processing, visualization).

out

Results and intermediate outputs from l1ou models and their subsequent iterative processing:

  • processed_regWs: wheatsheaf index values for all trees and traits analyzed, grouped by regime
  • processed_edges: convergent species pairs for each trait for creating the network graphs
  • processed_l1ouModels: l1ou model objects for each trait run for a block of 100 trees each, in .rds format

data

Morphological, taxonomic, and phylogenetic data used in the analyses. Raw specimen data is provided for craniodental and mandibular measurements in cranial_out.csv, for external measurements in external_out.csv, and all specimen details can be found in specimens_crosswalk.csv.

This dataset ('R Code and data for "Prevalence and patterns of convergent ecomorphological evolution in rodents"') is made available under the Open Data Commons Attribution License: http://opendatacommons.org/licenses/by/1.0.