luisviolinist
Bioengineer. Systems biology. Metabolism. Cancer. Diabetes. Genomics. Biotechnology.
New York
Pinned Repositories
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
dataanalysis
The lecture slides for Coursera's Data Analysis class
datasciencecoursera
datasharing
The Leek group guide to data sharing
dotdotdot
Example vignette for dotdotdot software
HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
instant-datascience-data-science-intro-000
leidenbase
luisviolinist's Repositories
luisviolinist/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
luisviolinist/dataanalysis
The lecture slides for Coursera's Data Analysis class
luisviolinist/datasciencecoursera
luisviolinist/datasharing
The Leek group guide to data sharing
luisviolinist/dotdotdot
Example vignette for dotdotdot software
luisviolinist/HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
luisviolinist/indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
luisviolinist/instant-datascience-data-science-intro-000
luisviolinist/leidenbase
luisviolinist/monocle3
luisviolinist/numpy
The fundamental package for scientific computing with Python.
luisviolinist/patchwork
The Composer of ggplots
luisviolinist/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
luisviolinist/project001
My first project on github!
luisviolinist/pysb
Python framework for Systems Biology modeling
luisviolinist/rasmodel
RAS Executable Model (REM)
luisviolinist/scAlign
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
luisviolinist/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
luisviolinist/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
luisviolinist/scRNA.seq.course
Analysis of single cell RNA-seq data course
luisviolinist/scScope
luisviolinist/seurat
R toolkit for single cell genomics
luisviolinist/single-cell-review
luisviolinist/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
luisviolinist/singlecelldb
An actionable database of publicly available single-cell RNA-seq data
luisviolinist/swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.