Pinned Repositories
aports
Mirror of aports repository
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
arvados
An open source platform for managing and analyzing biomedical big data
ball
The Biochemical Algorithms Library
baseimage-docker-xenial
A minimal Ubuntu base image modified for Docker-friendliness. This ia a fork for Phusion, but for Ubuntu Xenial
better-files
Simple, safe and intuitive Scala I/O
biodb
This program is intended to provide access to several biological databases with a common interface and options to filter the content with a certain set of descriptors
transmart-thehyve-docker
Docker images and Docker Compose deployment for The Hyve tranSMART
lukaszimmermann's Repositories
lukaszimmermann/SpectraST
lukaszimmermann/ball
The Biochemical Algorithms Library
lukaszimmermann/biodb
This program is intended to provide access to several biological databases with a common interface and options to filter the content with a certain set of descriptors
lukaszimmermann/bunny
Reproducible Analyses for Bioinformatics - Java
lukaszimmermann/cinder-docker-driver
lukaszimmermann/clinicalreporting_docxtemplater
Contains the code for generating clinical report with the docxtemplater
lukaszimmermann/cwltool
Common Workflow Language reference implementation
lukaszimmermann/de.openms.dynamic
An example plugin for using the dynamic KNIME node generation capabilities of the GenericKNIMENodes base plugin.
lukaszimmermann/DIC-terminology-server
A wrapper for the BioPortal API that simplifies the access to BioPortal ontologies, classes, value sets and values
lukaszimmermann/disopred
Protein structural disorder prediction
lukaszimmermann/docker_openms_archlinux_build
lukaszimmermann/docker_percolator_executable_static
lukaszimmermann/dockerfiles-openms
This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
lukaszimmermann/eduroam-wpa_supplicant
A sample wpa_supplicant configuration file for eduroam
lukaszimmermann/FAIRDataPoint
lukaszimmermann/FAIRifier
A tool to make data FAIR
lukaszimmermann/graphcool-server-example
🏡 GraphQL server example (Airbnb clone) using Graphcool DB, graphql-yoga & graphcool-binding
lukaszimmermann/hgi-systems
Orchestration and configuration management of hgi systems (using terraform & ansible)
lukaszimmermann/java-microservice
A full microservice project using Spring and many others tools
lukaszimmermann/ligandomat-2.0
lukaszimmermann/lombok
Very spicy additions to the Java programming language.
lukaszimmermann/osops-tools-contrib
Contributed Tools for OpenStack Operators
lukaszimmermann/packer-ubuntu-1604
Packer Example - Ubuntu 16.04 minimal Vagrant Box using Ansible provisioner
lukaszimmermann/pht-config-repo
lukaszimmermann/proteinmodel-knime
lukaszimmermann/qnavigator
lukaszimmermann/rdf4j
RDF4J Project
lukaszimmermann/tarql
SPARQL for Tables: Turn CSV into RDF using SPARQL syntax
lukaszimmermann/Tutorials
Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)
lukaszimmermann/workflows
Community maintained workflows & tools (with examples)