lutfia95
Bioinformatician and C/C++ lover. Interested in computational biology and fast algorithms.
Freie Universität Berlin & Fraunhofer IPKBerlin
Pinned Repositories
3D-PointCloud
Papers and Datasets about Point Cloud.
awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
awesome-point-cloud-analysis-2023
A list of papers and datasets about point cloud analysis (processing) since 2017. Update every day!
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Catch2
A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)
CBNplot
Bayesian network plot for the enrichment analysis results
CMake
Mirror of CMake upstream repository
yak
Yet another k-mer analyzer
lutfia95's Repositories
lutfia95/3D-PointCloud
Papers and Datasets about Point Cloud.
lutfia95/awesome-point-cloud-analysis-2023
A list of papers and datasets about point cloud analysis (processing) since 2017. Update every day!
lutfia95/bioconda-recipes
Conda recipes for the bioconda channel.
lutfia95/Catch2
A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)
lutfia95/CoFi
Review of the most used filters for similarity search applications, focusing on the different implementations and performance.
lutfia95/curl
A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET, TFTP, WS and WSS. libcurl offers a myriad of powerful features
lutfia95/cytoscape
Cytoscape: an open source platform for network analysis and visualization
lutfia95/DGE_workshop_salmon_online
lutfia95/dorado
A LibTorch Basecaller for Oxford Nanopore Reads
lutfia95/CPM.cmake
📦 CMake's missing package manager. A small CMake script for setup-free, cross-platform, reproducible dependency management.
lutfia95/cs-video-courses
List of Computer Science courses with video lectures.
lutfia95/dvc
🦉Data Version Control | Git for Data & Models | ML Experiments Management
lutfia95/faltwerk
A library for spatial exploratory data analysis of protein structures
lutfia95/folium
Python Data. Leaflet.js Maps.
lutfia95/gemma.cpp
lightweight, standalone C++ inference engine for Google's Gemma models.
lutfia95/ggtranscript
Visualizing transcript structure and annotation using ggplot2
lutfia95/hdf5
Official HDF5® Library Repository
lutfia95/imgui
Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies
lutfia95/kedro
A Python framework for creating reproducible, maintainable and modular data science code.
lutfia95/libzmq
ZeroMQ core engine in C++, implements ZMTP/3.1
lutfia95/lutfia95.github.io
Public website
lutfia95/pod5-file-format
Pod5: a high performance file format for nanopore reads.
lutfia95/qpp
Modern C++ quantum computing library
lutfia95/RawMap
Complements Minimap2 for a fast and efficient Read-Until pipeline
lutfia95/RAxMLGrove
lutfia95/read_until_api
Read Until client library for Nanopore Sequencing
lutfia95/ScavengerHunt
lutfia95/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
lutfia95/spumoni
Pan-Genomic Matching Statistics
lutfia95/Taxor
Fast and space-efficient taxonomic classification of long reads