Pinned Repositories
luffingfuture.github.io
Algorithm_JAVA
Bioinformatics
CRISPRme_gnomAD
d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
HiC_Hubs
NGS_Data_Analysis_Summer2016
Materials for NGS Data Analysis Course Summer 2016
Optimization_problem_BFGS
Spatial_analysis_Kriging
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
lux563624348's Repositories
lux563624348/Bioinformatics
lux563624348/HiC_Hubs
lux563624348/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
lux563624348/Spatial_analysis_Kriging
lux563624348/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
lux563624348/Algorithm_JAVA
lux563624348/Com-Phy
HW
lux563624348/CRISPRme_gnomAD
lux563624348/CS_Learning
lux563624348/biotech
lux563624348/diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
lux563624348/google_tools
lux563624348/HPC_colonial_one
lux563624348/IgA_Tianyi
Data_mining
lux563624348/investment_research
lux563624348/lux563624348.github.io
lux563624348/Multi_Sequence_Alignment
lux563624348/nextflow
Some projects in nextflow
lux563624348/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
lux563624348/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
lux563624348/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
lux563624348/RPA-Python
Python package for doing RPA
lux563624348/SAM
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
lux563624348/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
lux563624348/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
lux563624348/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
lux563624348/sec_review
A real world full-stack application using LlamaIndex
lux563624348/SISG2018
Materials for UW SISG Module 4
lux563624348/social_network
lux563624348/StarSpace
Learning embeddings for classification, retrieval and ranking.