/optEnvelope

Toolbox for strain design

Primary LanguageMATLAB

optEnvelope

1. Initialize cobra toolbox and set solver

initCobraToolbox(false)
changeCobraSolver('gurobi','all',0)

2. Load model and set desired product

load('iJR904.mat')
desiredProduct='EX_ac_e';

3. Run optEnvelope

[knockouts, midknockouts] = optEnvelope(iJR904, desiredProduct,'timeLimit', 600);

4. Preprint

https://www.biorxiv.org/content/10.1101/2023.03.10.532079v1