/findPalindromesandInvertedRepeats

Finds palindromes and inverted repeats in DNA Sequences based on user defined inputs

Primary LanguageC++

Author Lalitha Viswanathan

finds palindromes and inverted repeats
executable is palindrome 
palindrome <filename> <min seq length> <max seq length> <gap length> <max num of mismatcehs allowed> <score for match> <score for mismatch>
inverted repeats are stored in invertedrepeats.txt
palindromes are stored in palondubstrand.txt
readDNA.cpp reads the DNA sequence from the input file (<filename>)
pal.cpp is the main file which finds palindromes
pal.h is corresponding header file