Author: Lalitha Viswanathan Affiliation: Tata Consultancy Services rebase.pl converts REBASE.TXT into rebaseparsed.txt rebase.cpp is main .cpp file kmp is file for exact pattern matching kmp.cpp also contains code done for [patetrn searching with mismatches (rules of grammr) rulesofgrammar.txt contains rules of grammar (pattern searching with mismatches) results of finding recleavage site are in resultsREcleavagesite.txt REBASE at times gives enzyme as (x/y) enxyme pattern (w/z) it means at x postions upstream on fwd strand and w posns dwnstream on fwd strand at y posns upstream on rev strand and z posns dwnstraem on rev strand sometimes a ^ is found in the pattern as shown aa^aa it cuts at ^ posn sometimes none of the above is there in such a case am showing the location at which the pattern is found as , the posn of cutting
lvn3668/rebase-using-kmp
restriction enzyme cleavage site identifier using kmp algorithm and REBASE
C++