Pinned Repositories
AML_ATAC
Analyzing the ATAC-seq data from Eirini & Tiansu's AML development model
crisprML
Library design for CRISPr screen
DNAbarcodes
Simple generator of DNA barcodes for sequencing experiments
SdA_reduce
A place to store my research code for high content screening image dimensionality reduction
SeqDemote
CNNs for learning informative sub-sequence regions to predict accessibility or TF binding
lzamparo's Repositories
lzamparo/DNAbarcodes
Simple generator of DNA barcodes for sequencing experiments
lzamparo/AML_ATAC
Analyzing the ATAC-seq data from Eirini & Tiansu's AML development model
lzamparo/crisprML
Library design for CRISPr screen
lzamparo/SeqDemote
CNNs for learning informative sub-sequence regions to predict accessibility or TF binding
lzamparo/allennlp-demo
code for demo.allennlp.org
lzamparo/AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
lzamparo/bindspace_revisions
Revisions for BindSpace
lzamparo/blog_source
source and posts that generates content for lzamparo.github.io
lzamparo/coling2018
data and code for coling2018 paper
lzamparo/dask-jobqueue
Deploy Dask on job schedulers like PBS, SLURM, and SGE
lzamparo/DiCE
Generate Diverse Counterfactual Explanations for any machine learning model.
lzamparo/embedding
Learning semantic embeddings for TF binding preferences directly from sequence
lzamparo/epig
Prediction-oriented Bayesian active learning (AISTATS 2023)
lzamparo/kipoi
Kipoi's model zoo API
lzamparo/lzamparo.github.io
my github.io site
lzamparo/MCMC_and_Dynamics
Practice with MCMC methods and dynamics (Langevin, Hamiltonian, etc.)
lzamparo/mistral-src
Reference implementation of Mistral AI 7B v0.1 model.
lzamparo/practice
practice code for coding interviews; linked lists, stacks, queues and the like.
lzamparo/protein_fitness
test for protein fitness
lzamparo/PyTorchNLPBook
Code and data accompanying Natural Language Processing with PyTorch published by O'Reilly Media https://nlproc.info
lzamparo/Representer_Point_Selection
code release for Representer point Selection for Explaining Deep Neural Network in NeurIPS 2018
lzamparo/safe_harbor
Side project to find jointly accessible regions in pairs of celltypes
lzamparo/sams-vae
Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" by Bereket & Karaletsos published in Neurips 2023
lzamparo/ShogunScripts
These scripts were written by Irene Kaplow for running Shogun with various kernels.
lzamparo/simple-ebms
Contrastive-divergence EBMs on toy 2D datasets. Can be trained and visualised with a simple API.
lzamparo/simple_spearmint
Spearmint, without the gum
lzamparo/sparse-structured-attention
Sparse and structured neural attention mechanisms
lzamparo/TCN
Sequence modeling benchmarks and temporal convolutional networks
lzamparo/VQ-VAE
Minimalist implementation of VQ-VAE in Pytorch
lzamparo/yahoo-earnings-calendar
Scrapes Yahoo! Finance earnings calendar to get data for a specific date or a date range.