lzholl

lzholl's Stars

• nf-core/metatdenovo

  Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

  Language:Nextflow2210

• nf-core/modules

  Repository to host tool-specific module files for the Nextflow DSL2 community!

  Language:Nextflow284722

• nf-core/demultiplex

  Demultiplexing pipeline for sequencing data

  Language:Nextflow4438

• nf-core/proteinfold

  Protein 3D structure prediction pipeline

  Language:Nextflow6039

• nf-core/funcscan

  (Meta-)genome screening for functional and natural product gene sequences

  Language:Nextflow7420

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow926709

• nf-core/phyloplace

  nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

  Language:Groovy73

• nf-core/differentialabundance

  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

  Language:Nextflow6437

• nf-core/ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  Language:Nextflow188119

• nf-core/taxprofiler

  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

  Language:Nextflow12836