Pinned Repositories
nextflow-nanopore
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
bam2fastq
Nextflow pipeline to convert BAM/CRAM files to FASTQ files
cutnrun
cv-web-page
dragen-aws
Nextflow Pipeline for Testing Dragen Execution in AWS/LSF Hybrid Workflow
nf-core-chipseqcr
Nextflow pipeline for ChIP-seq and CUT&RUN analysis based on an nf-core template
nf-core-hic
Pipeline for Hi-C data analysis
nf-core-ttmap
Tool to re-map bam input files to T2T genome
m-mahgoub's Repositories
m-mahgoub/cutnrun
m-mahgoub/nf-core-chipseqcr
Nextflow pipeline for ChIP-seq and CUT&RUN analysis based on an nf-core template
m-mahgoub/bam2fastq
Nextflow pipeline to convert BAM/CRAM files to FASTQ files
m-mahgoub/cv-web-page
m-mahgoub/dragen-aws
Nextflow Pipeline for Testing Dragen Execution in AWS/LSF Hybrid Workflow
m-mahgoub/gosling
m-mahgoub/nf-core-hic
Pipeline for Hi-C data analysis
m-mahgoub/nf-core-ttmap
Tool to re-map bam input files to T2T genome
m-mahgoub/haplodiff
m-mahgoub/MetH5Format
HDF5-based container format for Methylation calls from long reads
m-mahgoub/nextflow-nanopore
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
m-mahgoub/nf-core-vcfintersect
Pipeline to intersect VCF files with different genomic features
m-mahgoub/nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
m-mahgoub/rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
m-mahgoub/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
m-mahgoub/snpdep
Program to calculate haplotype-specific depth from BAM/CRAM files
m-mahgoub/test-datasets
Test Datasets