m-westberg's Stars
JeffSHF/ColabDock
Code for ColabDock paper
microsoft/foldingdiff
Diffusion models of protein structure; trigonometry and attention are all you need!
google-deepmind/alphafold
Open source code for AlphaFold.
YoshitakaMo/localcolabfold
ColabFold on your local PC
bcov77/silent_tools
A bunch of shell utilities for dealing the silent files
jkaczmarski/variantplot
To create figures showing different protein variants, mutants etc
aqlaboratory/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
haddocking/prodigy
Predict the binding affinity of protein-protein complexes from structural data
pachterlab/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
LPDI-EPFL/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
glotaran/pyglotaran
A Python library for Global and Target Analysis of time-resolved spectroscopy data
holehouse-lab/shephard
Sequence-based Hierarchical and Extendable Platform for High-throughput Analysis of Region of Disorder
lightdock/lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
tiwarylab/GrASP
Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
LJPZebra/OLU
A Versatile and Open Source One- and Two-Photon Light-Sheet Microscope Design
steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
alexechu/protpardelle
PotoyanGroup/Seq2Ensemble
Seq2Ensemble: Collection of Colab based notebooks for facilitating conformational ensemble generation
sergio-santos-group/ProtoSyn.jl
A Julia-based framework for molecular modelling
ElisabethRoesch/Perspective_Julia_for_Biologists
Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
3dem/model-angelo
Automatic atomic model building program for cryo-EM maps
RosettaCommons/protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
LPDI-EPFL/masif_seed
Masif seed paper repository
nrbennet/dl_binder_design
royerlab/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
Kapoorlabs-CAPED/VollSeg
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.
SchmollerLab/Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
royerlab/napari-segment-anything
Segment Anything Model (SAM) native Qt UI
facebookresearch/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.