Components classified, but no denoising

[sgoksan]

Hi, I'm having a very similar problem to a previous user but I've tried downloading the most recent version of ICA-AROMA and I'm still not getting a denoised output.

From the error output it appears that the code is not getting as far as Step 3) Data denoising:

------------------------------- RUNNING ICA-AROMA -------------------------------
--------------- 'ICA-based Automatic Removal Of Motion Artifacts' ---------------
Step 1) MELODIC
Step 2) Automatic classification of the components

• registering the spatial maps to MNI
• extracting the CSF & Edge fraction features
• extracting the Maximum RP correlation feature
• extracting the High-frequency content feature
• classification
  Traceback (most recent call last):
  File "/home/ICA-AROMA-master/ICA_AROMA.py", line 226, in
  outDir)
  File "/home/ICA-AROMA-master/classification_plots.py", line 8, in classification_plot
  import matplotlib as mpl
  File "/usr/local/lib/python2.7/dist-packages/matplotlib/init.py", line 127, in
  from . import cbook
  ImportError: cannot import name cbook

I hope you can help.
Thank you!

[maartenmennes]

there seems to be a problem with your matplotlib installation. Could you reinstall or upgrade matplotlib (that is what google suggests for your "ImportError: cannot import name cbook" error)

[sgoksan]

Hi, thank you for your response.

I've tried upgrading matplotlib but everything was already up to date.
I then tried installing an older version of matplotlib (2.0.2) and this time the denoising worked. Do you think this is an appropriate fix?

Thanks
Sezgi

[maartenmennes]

yes, the plotting is purely for illustration purposes and has no influence on the classification or denoising.