fsl
There are 70 repositories under fsl topic.
aramis-lab/clinica
Software platform for clinical neuroimaging studies
quqixun/BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
andrewjahn/AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
maartenmennes/ICA-AROMA
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
IBT-FMI/SAMRI
Small Animal Magnetic Resonance Imaging via Python.
muschellij2/fslr
FSL-R Interface package
spisakt/pTFCE
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
vanandrew/brainextractor
A re-implementation of FSL's Brain Extraction Tool in Python
NatLee/nipype-preprocess-on-brain-MR
The project is used to do preprocessing on brain MR images by using Nipype.
robertoostenveld/bids-tools
Tools for dealing with neuroimaging data in the BIDS structure
shimming-toolbox/shimming-toolbox
Code for performing static, dynamic and real-time shimming using external and internal MRI shim coils
carpentries-incubator/SDC-BIDS-dMRI
Introduction to dMRI
nmningmei/preprocessing_pipelines
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
spunt/bspm
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
Macatools/macapype
PNH segmentation pipelines based on nipype
dmascali/mni2atlas
FSL Anatomical Labels for MNI Vector/ROI
IARSystems/ewrl78-linker-config-flashlibs
A collection of ILINK linker configurations that simplifies project setup for flash libraries on IAR Embedded Workbench for Renesas RL78
jlohmeier/atlasBREX
atlasBREX: Automated averaged template-derived brain extraction in animal MRI
lamyj/erwin
Quantitative MRI toolbox in Python
mbedini/The-HCP-MMP1.0-atlas-in-FSL
A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.
weikanggong/Resting-state-fMRI-preprocessing
A Matlab-based software package for preprocessing the resting-state fMRI data
rlin27/BATMANN
Implementation for paper "BATMANN: A Binarized-All-Through Memory-Augmented Neural Network for Efficient In-Memory Computing"
NIRALUser/CIVILITY
Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.
zavaro/fsl_slurm
A modified FSL version for use with Slurm
fcayci/xilinx_vga_fsl_ip_core
Example VGA IP Core using FSL for Xilinx FPGAs
angeella/pARI
pARI: permutation-based All-Resolutions Inference
DVS-Lab/general
General utility scripts, documentation, and analysis tutorials for Smith Lab.
aramis-lab/clinica-pydra-fsl
Pydra tasks for FSL designed for Clinica
arpitmaheshwari213/Epitome-Extraction-and-Tumour-Classification-from-MRIs-of-Brain
A CNN based classification model for 3D NIfTI MRIs of the brain.
Hyedryn/elikopy
ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.
carlossantosgarcia/few-shot-classification
We explore different techniques to perform few-shot-classification of fashion images.
MJ12358/fsl-work-map
A Field Service Lightning map displaying service appointments or work orders and much more.
omerferhatt/bold-fmri-img-processing
Preprocessing fMRI scans, localizing the brain area that processes faces.
wmotte/ocd
Scripts to process preclinical obsessive compulsive disorder data
wpmed92/WebMRI
An Emscripten port of BET and FLIRT of FMRIB Software Library
jhuguetn/fsl_oxford_asl-docker
FSL oxford_asl Docker image