/fsl_oxford_asl-docker

FSL oxford_asl Docker image

Primary LanguageDockerfileGNU General Public License v3.0GPL-3.0

FSL oxford_asl docker image GitHub release DockerHub pulls

Docker image including a minimal selection of FSL 6.0.7.7 packages required to run oxford_asl tools from FSL library.

Find the image in Docker Hub here.

Components

  • Ubuntu 20.04 LTS (Focal Fossa)
  • conda-forge Miniforge3 23.11.0-0
  • FSL 6.0.7.7 packages:
    • fsl-oxford_asl (v4.0.29)
    • fsl-flirt (2111.2)
    • fsl-bet2 (2111.7)
    • fsl-base (2401.0)
    • fsl-utils (2203.4)
    • fsl-misc_scripts (2111.0)
    • fsl-data_standard (2208.0)

Example (registration of ASL image to T1w target space)

 docker run -it --rm -v `pwd`/data:/data jhuguetn/fsl_oxford_asl \
 asl_reg -i /data/pCASL.nii.gz -s /data/T1w.nii -o /data/output

Credits

Jordi Huguet (BarcelonaBeta Brain Research Center)