Macatools/macapype

Issues

• [MINOR] Some minor issues Dockerfile

  #246 opened 10 months ago by davidmeunier79
  0

• Cannot find example data such as "data_test_macaque_processed.zip"

  #240 opened a year ago by Cdefgpku
  1

• replace zeros by NaN in 5tt derivatives

  #219 opened 2 years ago by lauralopezgaldo
  0

• For segment_pnh relative -out paths lead to results in the wrong path

  #213 opened 2 years ago by FeHoff
  0

• add pybids without session (no ses- in directory structure and file names)

  #212 opened 2 years ago by davidmeunier79
  5

• add transfo in derivatives

  #211 opened 2 years ago by davidmeunier79
  0

• Docker instructions missing path

  #208 opened 2 years ago by danjgale
  1

• Options when subjects fail in crop_aladin stage

  #207 opened 2 years ago by julfou81
  1

• Documentation of all possible options in params and indiv_params

  #162 opened 3 years ago by davidmeunier79
  0

• Adding and checking orientation of images

  #113 opened 2 years ago by davidmeunier79
  2

• [BUG] correct padding with long_single_preparation_pipe

  #205 opened 2 years ago by davidmeunier79
  0

• bug nifti_reg and spm version

  #197 opened 2 years ago by davidmeunier79
  0

• Add -template for users to specify their own template

  #178 opened 2 years ago by davidmeunier79
  0

• Add -species in the command (sorry for closing accidentally)....

  #134 opened 3 years ago by davidmeunier79
  2

• Add T2_debiased instead if T1_debiased in atlas_brex

  #161 opened 3 years ago by davidmeunier79
  0

• adding a software license?

  #155 opened 3 years ago by SylvainTakerkart
  1

• Segmentation from T2w scans

  #136 opened 4 years ago by kepkeeloh
  0

• Making macapype cli run as executable (in particular if installed with pip)

  #132 opened 4 years ago by davidmeunier79
  1

• Add -species in the command

  #129 opened 4 years ago by davidmeunier79
  0

• Freesurfer space discussion

  #96 opened 4 years ago by ostanley
  1

• Integration of the JunaChimp Template and DaVi parcellation for chimpanzee images processing

  #126 opened 4 years ago by FeHoff
  2

• Myelin maps from T1 and t2

  #120 opened 4 years ago by davidmeunier79
  3

• Make an output folder BIDS compatible in derivatives/

  #116 opened 4 years ago by julfou81
  1

• Adding freesurfer pipeline

  #112 opened 4 years ago by davidmeunier79
  2

• wrap NMT v2 when available

  #118 opened 4 years ago by davidmeunier79
  1

• Specifying the number of allocated processes in command line args

  #115 opened 4 years ago by davidmeunier79
  1

• [pipelines/register.py] Dealing with oblique images with 3dWarp -card2oblique

  #58 opened 5 years ago by kepkeeloh
  1

• Tutorial

  #55 opened 4 years ago by davidmeunier79
  0

• Pipeline from mask already computed

  #52 opened 4 years ago by davidmeunier79
  0

• Docker

  #54 opened 4 years ago by davidmeunier79
  1

• Adding individual json specifying some parameters for specific individuals/sessions

  #43 opened 4 years ago by davidmeunier79
  2

• pipeline with T1 only file

  #51 opened 4 years ago by davidmeunier79
  1

• BUG: Single session data does not result in an executing pipeline

  #86 opened 4 years ago by ostanley
  1

• BUG: Custom reorientation dimensions cannot be created outside of short prep pipeline

  #88 opened 4 years ago by ostanley
  1

• BUG: Reorient pipeline has wrong output connection in long single prep pipeline

  #90 opened 4 years ago by ostanley
  1

• ENH: More nipype style documentation for easier end use

  #97 opened 4 years ago by ostanley
  0

• Include Updated NMT Template and NMT Scripts (v1.3)

  #56 opened 4 years ago by kepkeeloh
  0

• small correction on the doc's homepage

  #81 opened 4 years ago by SylvainTakerkart
  0

• Add a SPM based workflow also runable with a T1 only

  #53 opened 4 years ago by BastienCagna
  1

• parse_key bug if node not in multi_params

  #68 opened 5 years ago by davidmeunier79
  0

• macapype.__version__ does not exists

  #60 opened 5 years ago by BastienCagna
  2

• [T1xT2] outputs are forced to be .nii.gz (hard coded)

  #20 opened 5 years ago by BastienCagna
  0

• Rename pipelines

  #44 opened 5 years ago by BastienCagna
  0

• [T1xT2] outputs are generated int he source directory

  #19 opened 5 years ago by BastienCagna
  1

• [nodes/bash_regis] Create a function that give the path of the bash directory

  #21 opened 5 years ago by BastienCagna
  1