nipype
There are 28 repositories under nipype topic.
ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
dPys/PyNets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
miykael/nipype-beginner-s-guide
Beginner's guide for Nipype
NatLee/nipype-preprocess-on-brain-MR
The project is used to do preprocessing on brain MR images by using Nipype.
Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit
The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
neuropycon/ephypype
Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype
nmningmei/preprocessing_pipelines
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
Macatools/macapype
PNH segmentation pipelines based on nipype
Neurita/pypes
Reusable neuroimaging pipelines using nipype
nipreps/eddymotion
Open-source eddy-current and head-motion correction for dMRI.
Neurita/neuro_docker
A Dockerfile to create a Ubuntu docker for neuroimaging
populse/populse_mia
Multiparametric Image Analysis
brainhack-ch/superres-mri
Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution
axiezai/pipetography
Nipype and tractography!
spisakt/PUMI
Pypelines Utilizing a Modular Inventory
jrasero/my-nipype-pipelines
Some pipelines implemented with nipype.
andrewrosss/nipype-generate-fieldmaps
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
JohannesWiesner/csp_docker
A repository for creating Docker and Singularity files using Neurodocker
pni-lab/PUMI
PUMI: neuroimaging Pipelines Using Modular workflow Integration
rmukh/basicregistrationMRIpipeline
The basic structural and diffusion MRI registration with pre-processing pipeline in Python.
tsalo/complex-flow
Initial work on a complex-valued fMRI preprocessing workflow.
p3proc/p3
An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline
p3proc/p3-compose
A graphical pipeline builder for p3 in electron
andrewrosss/nipype-fsl-anat
Nipype interface(s) wrapping the fsl_anat command line tool
schluppeck/dockerize-analysis
build a container from which EH's analysis code (and others) can be run, without relying on windows/mac compatibility
txrunn/jupyter-purcell
An innovative and collaborative solution for setting up and executing Jupyter Notebooks on High-Performance Computing (HPC) clusters, tailored for neuroscience data processing workflows.