axiezai/pipetography

Issues

• Invalid first line for key/value file

  #42 opened 3 years ago by ctlin001
  2

• Remove connectomes rounding step

  #32 opened 3 years ago by benjaminsipes
  0

• Make GMWMI generation optional

  #34 opened 3 years ago by benjaminsipes
  1

• The debug mode conditions is wrong XD

  #39 opened 3 years ago by axiezai
  0

• Connection in connectome needs to be a list

  #40 opened 3 years ago by axiezai
  1

• Debug mode

  #27 opened 3 years ago by axiezai
  0

• Remove `args = genericLabel` and replace in `inputs.interpolation`

  #36 opened 3 years ago by axiezai
  2

• Suppress warnings in notebooks for future docs

  #38 opened 3 years ago by axiezai
  0

• Better module names and refactor

  #29 opened 3 years ago by axiezai
  1

• mrtrix3's 5ttgen creating questionable GM-WM interface segmentation

  #28 opened 3 years ago by axiezai
  2

• Remove `conda` from recipe

  #33 opened 3 years ago by axiezai
  0

• Complete input features for certain commands

  #3 opened 5 years ago by axiezai
  5

• mrtrix3 3.0 now a default for neurodocker

  #25 opened 3 years ago by axiezai
  1

• update instructions on `how to run`

  #20 opened 3 years ago by pfdamasceno
  1

• Segmentation workflow

  #23 opened 3 years ago by axiezai
  0

• fix `base_dir` repetitive path

  #26 opened 3 years ago by axiezai
  0

• Working directory for workflow should also be specified somehow...

  #19 opened 3 years ago by axiezai
  2

• connectome workflow needs sub-ses filtering

  #24 opened 3 years ago by axiezai
  1

• Remove freesurfer and matlab from environment check

  #17 opened 3 years ago by axiezai
  1

• Can't build docker image

  #22 opened 3 years ago by axiezai
  0

• Output datasink to BIDS structure

  #14 opened 4 years ago by axiezai
  2

• testing...

  #15 opened 4 years ago by axiezai
  1

• Add docker hub download instructions for setup

  #18 opened 4 years ago by axiezai
  1

• Fix container recipe to exclude conda environment step

  #10 opened 4 years ago by axiezai
  1

• libopenblas.so.0 missing

  #13 opened 4 years ago by axiezai
  1

• FS 7.1 hippocampal subfield incorrect inputs

  #8 opened 4 years ago by axiezai
  1

• More efficient freesurfer and white matter behavior

  #11 opened 4 years ago by axiezai
  1

• Docs/Instructions/Formatting

  #5 opened 4 years ago by axiezai
  1

• Set-up CI with neurodocker

  #1 opened 4 years ago by axiezai
  1

• Update `settings.ini` with barebones requirements!

  #2 opened 5 years ago by axiezai
  1