tractography

There are 84 repositories under tractography topic.

  • Slicer/Slicer

    Multi-platform, free open source software for visualization and image computing.

    Language:C++1.5k385.7k514

  • Slicer/SlicerGitSVNArchive

    :warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

    Language:C++874900460

  • dipy/dipy

    DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

    Language:Python68054914429

  • cwatson/brainGraph

    Graph theory analysis of brain MRI data

    Language:R164173447

  • PennLINC/qsiprep

    Preprocessing and reconstruction of diffusion MRI

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  • dPys/PyNets

    A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

    Language:Python11794441

  • raamana/neuropredict

    Easy and comprehensive assessment of predictive power, with support for neuroimaging features

    Language:Python99104927

  • SlicerDMRI/SlicerDMRI

    Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

    Language:C++7469226

  • MIC-DKFZ/MITK-Diffusion

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    Language:C++6961215

  • SlicerDMRI/whitematteranalysis

    White matter tractography clustering and more...

    Language:Python6377432

  • mfroeling/QMRITools

    Processing and visualization tools for quantitative MRI data

    Language:Mathematica57111317

  • brain-life/encode

    Method for encoding brain connectomes in multidimensional arrays (tensors).

    Language:MATLAB38132025

  • tractor/tractor

    Magnetic resonance imaging and tractography with R

    Language:C++28668

  • delucaal/MRIToolkit

    Language:MATLAB24004

  • SlicerDMRI/ORG-Atlases

    ORG Fiber Clustering White Matter Atlas

    24546

  • carpentries-incubator/SDC-BIDS-dMRI

    Introduction to dMRI

    Language:Jupyter Notebook2085516
  • PyDesigner

    muscbridge/PyDesigner

    A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

    Language:Python2051146

  • ruizengalways/FOD-Net

    FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

    Language:Python17235

  • scil-vital/TrackToLearn

    Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning

    Language:Python1441610
  • MRtrix3Tissue

    3Tissue/MRtrix3Tissue

    MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

    Language:C++107366

  • chamberm/fibernavigator

    FiberNavigator - Maxime Chamberland -

    Language:C++10502

  • pykao/BraTS2018-survival-prediction

    We provide a method to extract the tractographic features from structural MR images for patients with brain tumor

    Language:Python10201

  • cwatson/mri_library

    Scripts for MRI preprocessing

    Language:Shell9202

  • MASILab/cornn_tractography

    Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

    Language:Python9311

  • NIRALUser/CIVILITY

    Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.

    Language:JavaScript8604

  • FangCai-fifi/surf-trac-to-obj

    These scripts are used to generate brain surface and tract files (in .obj format, parcellated and registered) from Freesurfer recon-all and trac-all packages.

    Language:Python7100
  • UNRAVEL

    DelinteNicolas/UNRAVEL

    This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

    Language:Python6271

  • KUL-Radneuron/KUL_FWT

    Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

    Language:Shell6224

  • scil-vital/tractolearn

    Tractography learning

    Language:Python64145

  • DanNBullock/WiMSE

    A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.

    Language:Jupyter Notebook5346

  • lorifranke/FiberStars

    Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

    Language:JavaScript5201

  • matteomancini/trampolino

    TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

    Language:Python5112

  • axiezai/pipetography

    Nipype and tractography!

    Language:Jupyter Notebook43302

  • brainlife/app-mrtrix3-act

    Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.

    Language:Shell410119

  • Apsis/TrainTracts

    Blender plugin for rendering brain tractography (.tck) files!

    Language:Python3100

  • DelinteNicolas/UTracto

    Package facilitating the tracking of sub-cortical U-Fibers

    Language:Python3100