tractography

There are 85 repositories under tractography topic.

  • Slicer/Slicer

    Multi-platform, free open source software for visualization and image computing.

    Language:C++1.8k415.8k565

  • Slicer/SlicerGitSVNArchive

    :warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

    Language:C++871890458

  • dipy/dipy

    DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

    Language:Python72558948442

  • cwatson/brainGraph

    Graph theory analysis of brain MRI data

    Language:R185183453

  • dPys/PyNets

    A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

    Language:Python12394441

  • raamana/neuropredict

    Easy and comprehensive assessment of predictive power, with support for neuroimaging features

    Language:Python99104927

  • MIC-DKFZ/MITK-Diffusion

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    Language:C++8561515

  • SlicerDMRI/SlicerDMRI

    Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

    Language:C++7879227

  • SlicerDMRI/whitematteranalysis

    White matter tractography clustering and more...

    Language:Python7177934

  • mfroeling/QMRITools

    Processing and visualization tools for quantitative MRI data

    Language:Mathematica63121317

  • brain-life/encode

    Method for encoding brain connectomes in multidimensional arrays (tensors).

    Language:MATLAB38132025

  • tractor/tractor

    Magnetic resonance imaging and tractography with R

    Language:C++28668

  • SlicerDMRI/ORG-Atlases

    ORG Fiber Clustering White Matter Atlas

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  • delucaal/MRIToolkit

    Language:MATLAB25004

  • carpentries-incubator/SDC-BIDS-dMRI

    Introduction to dMRI

    Language:Jupyter Notebook2485518
  • PyDesigner

    muscbridge/PyDesigner

    A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

    Language:Python2451187

  • scil-vital/TrackToLearn

    Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning

    Language:Python2041810

  • ruizengalways/FOD-Net

    FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

    Language:Python18235
  • UNRAVEL

    DelinteNicolas/UNRAVEL

    This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

    Language:Python14271

  • MASILab/cornn_tractography

    Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

    Language:Python14311
  • MRtrix3Tissue

    3Tissue/MRtrix3Tissue

    MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

    Language:C++107386

  • chamberm/fibernavigator

    FiberNavigator - Maxime Chamberland -

    Language:C++10502

  • cwatson/mri_library

    Scripts for MRI preprocessing

    Language:Shell10202

  • DelinteNicolas/UTracto

    Package facilitating the tracking of sub-cortical U-Fibers

    Language:Python10100

  • pykao/BraTS2018-survival-prediction

    We provide a method to extract the tractographic features from structural MR images for patients with brain tumor

    Language:Python10201

  • NIRALUser/CIVILITY

    Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.

    Language:JavaScript8604

  • FangCai-fifi/surf-trac-to-obj

    These scripts are used to generate brain surface and tract files (in .obj format, parcellated and registered) from Freesurfer recon-all and trac-all packages.

    Language:Python7100

  • KUL-Radneuron/KUL_FWT

    Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

    Language:Shell7225

  • DanNBullock/WiMSE

    A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.

    Language:Jupyter Notebook6346

  • lorifranke/FiberStars

    Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

    Language:JavaScript6201

  • matteomancini/trampolino

    TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

    Language:Python6112

  • scil-vital/tractolearn

    Tractography learning

    Language:Python64145

  • Apsis/TrainTracts

    Blender plugin for rendering brain tractography (.tck) files!

    Language:Python4100

  • axiezai/pipetography

    Nipype and tractography!

    Language:Jupyter Notebook43302

  • brainlife/app-mrtrix3-act

    Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.

    Language:Shell410119

  • Xinyu-Nie/SurfTracker

    A novel probabilistic tractography in Superficial White Matter

    Language:C4111