brain-segmentation

quqixun/BrainPrep

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

koriavinash1/DeepBrainSeg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

josedolz/LiviaNET

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

josedolz/HyperDenseNet

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

MaciejMazurowski/brain-segmentation

Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net

NYUMedML/DARTS

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

ai-med/QuickNATv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

volBrain/AssemblyNet

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

NatLee/nipype-preprocess-on-brain-MR

The project is used to do preprocessing on brain MR images by using Nipype.

peirong26/Brain-ID

[ECCV 2024] Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging

Macatools/macapype

PNH segmentation pipelines based on nipype

shivangi-aneja/Multi-Modal-Brain-Segmentation

3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning

AICONSlab/iCVMapp3r

AICONSlab's brain extraction (skull-stripping) algorithm using CNNs

freesurfer/samseg

Sequence Adaptive Multimodal SEGmentation (SAMSEG)

AICONSlab/VentMapp3r

AICONSlab's ventricular segmentation technique using CNNs

vladzalevskyi/brain-segmentation

This repository contrains source code and the report for the Brain Segmentation challenge. It was the final assignment for the Medical Image Segmentation and Analysis course at the University of Girona for the MAIA programme.

CSIM-Toolkits/Slicer-LesionSpotlightExtension

3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions

leslie-zi-pan/WMH_Segmentation_ipynb

Brain white matter hyperintensity segmentation, with T1 and FLAIR MRI images, using UNet.

CRazorback/OHSR

[MICCAI'23] "Learning Ontology-Based Hierarchical Structural Relationship for Whole Brain Segmentation".

asyrofist/brain-segmen

This project shows a simple way to segment a brain MRI image

anto18671/brain-mri-segmentation

This project trains a Mask R-CNN with an EfficientViT-FPN backbone to segment brain MRI FLAIR abnormalities from the TCGA-LGG dataset. It includes data augmentation, custom anchors, warmup+exponential scheduling, and supports ONNX export for deployment.

FelixGunzer/JCD_thesis

Radiological-anatomical distribution patterns of Jakob-Creutzfeldt disease in relation to functional cortical systems

aqntks/brain-seg

Brain Segmentation

CindyZJT/UMM-Net

CSIM-Toolkits/SlicerBrainVolumeRefinement

3D Slicer extension for the Brain Volume Refinement methods (BVeR)

kolaszko/brain_segmentation

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musimab/Unet_brain_segmentation

unet brain segmentation with pytorch c++

davidj-brewster/hippocampus-morphology-segmentation

Very early pythonic attempt at hippocampus segmentation and detection using preprocessing, skull-stripping, then medpy and skimage morphology methods

SiyangJ/MacaqueSeg

Macaca Mulatta brain tissue segmentation project with prof. Martin Styner.

thildebrant/tbi