aramis-lab/clinica

Issues

• Cannot conduct "dwi-preprocessing-using-t1" without using cuda

  #1075 opened 4 months ago by felicityshaw
  6

• Support for DKT atlas in pet-surface

  #1049 opened 5 months ago by PavanChaggar
  5

• ADNI-to-BIDS problem with PET

  #952 opened a year ago by Ryurin
  10

• PET-tau does not found by adni-to-bids

  #1082 opened 4 months ago by shaharEd
  0

• Pet Pipeline: Non-Selective Reprocessing of Eligible Bids Entries

  #1079 opened 4 months ago by souravraha
  4

• Does the Clinica ADNI-to-BIDS pipeline build field maps?

  #1044 opened 5 months ago by likeajumprope
  2

• Request for Technical Support on Memory Issues with Clinica Software

  #1011 opened 7 months ago by mtmmu88
  1

• Clinica Pipeline Compatibility Issue with Ants Package Versions

  #1069 opened 4 months ago by souravraha
  11

• Potentially remove documentation relative to ICM cluster

  #983 opened 8 months ago by NicolasGensollen
  1

• Update documentation for pipeline `StatisticsSurface`

  #980 opened 8 months ago by NicolasGensollen
  1

• Contrast Manager Failing During Statistics-Volume Pipeline

  #976 opened 4 months ago by J-V1
  9

• Issue: error clinica convert oasis3-to-bids Oasis3test Oasis3test/ClinicalData Oasis3BidsRun

  #977 opened 4 months ago by SimonChenS
  9

• Add support for Python 3.12

  #994 opened 8 months ago by NicolasGensollen
  0

• Improve Modality Detection in Clinica's ADNI to BIDS Converter

  #1060 opened 4 months ago by souravraha
  2

• Add BIDS Conversion for Blood Recording Data into ADNI-to-BIDS

  #1053 opened 5 months ago by Ianyliu
  1

• Allow the Clinica file reader to get DWI DTI output images

  #1056 opened 5 months ago by NicolasGensollen
  0

• Wrong return value documented in `get_subject_session_list`

  #1051 opened 5 months ago by NicolasGensollen
  0

• Non regression tests for converters are slower on Linux CI machines than MacOS machines

  #985 opened 8 months ago by NicolasGensollen
  1

• Issue with FSL PhaseEncodingDirection in DWI-Preprocessing Pipeline

  #1034 opened 6 months ago by souravraha
  7

• Ambigous statistics-volume arguments when not using t1-volume gray matter maps in input

  #829 opened 6 months ago by AudreyDuran
  4

• Fix fast non regression tests on CI

  #1033 opened 6 months ago by NicolasGensollen
  0

• [Converters] Make sure the PhaseEncodingDirection is BIDS compliant

  #1039 opened 6 months ago by MatthieuJoulot
  0

• ADNI converter not able to convert T1 images

  #1010 opened 7 months ago by RR979
  11

• Provide better documentation for SPM standalone setup

  #820 opened 2 years ago by ghisvail
  9

• Add ressources estimations for pipelines

  #1031 opened 6 months ago by NicolasGensollen
  0

• Factorize `install_nifti`

  #826 opened 2 years ago by NicolasGensollen
  6

• ADNI converter unable to handle new csv name

  #1002 opened 7 months ago by MatthieuJoulot
  0

• [IOTOOLS] Regression on clinica iotools merge-tsv

  #1012 opened 7 months ago by MatthieuJoulot
  0

• Enable user control over the number of jobs for converters

  #1007 opened 7 months ago by NicolasGensollen
  1

• CLI of pipeline `PETLinear` broken in `0.7.6` release

  #1003 opened 8 months ago by NicolasGensollen
  0

• Clinica Run T1-Linear Fails Due to FileNotFoundError in N4BiasFieldCorrection Node

  #998 opened 8 months ago by mtmmu88
  18

• Running into an issue with running statistics-volume

  #975 opened 9 months ago by J-V1
  0

• OASIS3 to BIDS not working well with me

  #941 opened 9 months ago by YasmineMH1997
  14

• ADNI to BIDS "Clinical data cannot be extracted"

  #966 opened 9 months ago by mondrus96
  9

• dti-preprocessing not generating .bvec files

  #953 opened 9 months ago by ta4218
  1

• Cannot install Clinica with MLflow

  #961 opened 9 months ago by ghisvail
  2

• ADNI-to-BIDS problem with MRI

  #955 opened 10 months ago by danielliu99
  9

• BIDS Validator errors in scans.tsv files for ADNI2BIDS converter

  #958 opened 10 months ago by NicolasGensollen
  0

• pet-surafce pipeline Error: FileNotFoundError: [Errno 2] No such file or directory: '/some/path/to/surf/lh.white_exp-007'

  #890 opened a year ago by sungoku
  4

• Issue: Error running !clinica run t1-linear

  #896 opened a year ago by ridaqp
  4

• T1-linear: error running t1-linear with --random_seed

  #939 opened a year ago by camillebrianceau
  1

• Probably Bugs with the NIFD converter

  #929 opened a year ago by Kateridge
  6

• ValueError: invalid literal for int() with base 10: 'ns1'

  #913 opened a year ago by mselimata
  12

• Wrong phase mapping in `generate_acq_file`

  #887 opened a year ago by NicolasGensollen
  3

• Unused node `ApplyXFM` in EPI pipeline

  #880 opened a year ago by NicolasGensollen
  0

• [PET] Improve how to 4D images with 1 volume are handled

  #871 opened a year ago by alexandreroutier
  4

• run statistics-volume-correction raises "AssertionError: pattern argument cannot start with char: /"

  #827 opened a year ago by AudreyDuran
  4

• FWHM seems unused in statistics-volume pipeline with t1-volume data

  #830 opened a year ago by AudreyDuran
  1

• Error in Part 3/4 of running t1-volume-dartel2mni pipeline, occurs in function _zip_unzip_nii

  #835 opened 2 years ago by zhaonann
  1

• Noisy nipype update availability warnings

  #798 opened 2 years ago by ghisvail
  0