Hippocampus mask unavailable/incompatible
naji-s opened this issue · 1 comments
Describe the bug
I am trying to create left and right Hippocampi masks that would be compatible with Clinica's adni-to-bids (and then to CAPS) converter. Unfortunately though it seems like t1-linear processing is mixed with a cropping that is to my knowledge uses the template ref_cropped_template.nii.gz based on
I have also made a bug issue in clinica-dl here:
aramis-lab/clinicadl#537
And including it for clarity, since the original use of masks as part of data prepration is suggested there
My question is that can masks (taken from TamplateFlow be cropped using the reference tempalte I outlined above and they end up being compatible with CAPS data processed through Clinica?
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