Does the Clinica ADNI-to-BIDS pipeline build field maps?
Closed this issue · 6 comments
Description
Hi, we are planning to use the ADNI to BIDS pipeline. We could not find any information on whether this pipeline includes the building of field maps. Does it?
Pipeline
Which Clinica's Pipeline is concerned?
- building of field maps
Converters
Which Clinica's converter is concerned?
- adni-to-bids
I/O tools
Which Clinica's tool is concerned?
NA
I am interested in this as well, specifically fMRI field maps, either GRE or AP/PA images that would then be stored in a BIDS compliant FMAP folder for use with (e.g.) fMRIprep later.
The ADNI to BIDS pipeline doesn't currently convert field maps and I don't believe this was planned in our roadmap.
Depending on how much work it would be to include these in the conversion (and maintain the added code), we could consider implementing it.
In order to grasp this amount of work, could you specify your feature request in more details ? For example, on a specific example (subject XXX, session YYY) what are the input files that we would need and what would the output looks like.
Hello, our team is also interested in having this feature. I'm currently working on editing the code to address this issue. Has any work been done for this so far? If not, we may submit a pull request in the future.
Hello, our team is also interested in having this feature. I'm currently working on editing the code to address this issue. Has any work been done for this so far? If not, we may submit a pull request in the future.
Hi @tharpm95
Nothing has been done on our side so far so feel free to go for it and open a PR.
Let me know if can help in the process.
A PR has been submitted for this issue. Let me know if you want to go over any specific code segments
Thanks for the PR @tharpm95 ! 🙏
Will take a look asap.