Pinned Repositories
-Ensembl-Id-Gene-Transcript-Protein-Mapping
2016-06-01-intro-r
Introduction to R workshop to be held on 2016-06-01
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bisulfite_cfDNA
Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS
BuildingIntelligentApplications
MBpanel
The scripts for scientific paper titled “Integrative analysis of gene expression and DNA methylation based on the previously existing one-class logistic regression machine learning approach identifies stemness features in medulloblastoma”
PCa_m6A
scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
mackaay's Repositories
mackaay/MBpanel
The scripts for scientific paper titled “Integrative analysis of gene expression and DNA methylation based on the previously existing one-class logistic regression machine learning approach identifies stemness features in medulloblastoma”
mackaay/PCa_m6A
mackaay/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
mackaay/bisulfite_cfDNA
Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS
mackaay/cfDNAme
mackaay/chenkaima.github.io
mackaay/ChiPSeq
mackaay/Clinker
Gene Fusion Visualiser
mackaay/cruk-summer-school-2018
Summer school course materials collection
mackaay/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
mackaay/DNAmethylation
mackaay/gatk4-genome-processing-pipeline
Workflows used for processing whole genome sequence data + germline variant calling.
mackaay/gatk4-somatic-cnvs
This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
mackaay/GBMvsNormal
mackaay/ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
mackaay/IDH
mackaay/infercnv
Inferring CNV from Single-Cell RNA-Seq
mackaay/MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
mackaay/MPscore
a score to predict / cluster meningioma progression
mackaay/phy_clo_dy
Phylogenetic inference from whole genome sequencing data and modeling of clonal dynamics
mackaay/ProteinEstimation
mackaay/Python-100-Days
Python - 100天从新手到大师
mackaay/Rnewfolder
mackaay/Rtesting
Rtesting
mackaay/SCS_CAF
mackaay/StableVsRecurrence
mackaay/TCGAsubtypemiR
mackaay/tumorEvolution
mackaay/WholeDataVis
mackaay/WSHPackage
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL