maclandrol/FisherExact

Problem using a 3x3 matrix

Closed this issue · 2 comments

Hi, I am using the following matrix:

3 3

159 4 80
3 25 0
30 0 108

And I obtained the pvalue=0

Why is that?

Is not possible to use mxm matrices?

Thanks.

It should definitively work. I got :

Pvalue : 1.50266533e-47

I assume you are using the binary. There was a bug in the pvalue printing that was fixed in commit cdf4684 some while ago. If you install using the github repository, then there shouldn't be any problem. However I forgot to update the pypi version so the bug was still there (binary only). I fixed it.

Thanks.