MacLean Lab

Cell-Cell-Communication

Code to accompany the paper: 10.1242/dev.199779

dynamicEMT-genes

model-discovery

ModelingMDSCs

Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

network-logic-EMT

GRN models of EMT to investigate the effects of network logic on multistable phenotypes

popInfer

GRN inference with joint scRNA-seq + scATAC-seq data

RVAgene

Recurrent Variational Auto gene encoder

scFMC-model

Github repository for "Developmental hematopoietic stem cell fate decisions explain clonal dynamics over lifetime"

singlecell-parinf

stemcell-superhero

Interactive cell differentiation model demo

maclean-lab/RVAgene

Recurrent Variational Auto gene encoder

maclean-lab/Cell-Cell-Communication

Code to accompany the paper: 10.1242/dev.199779

maclean-lab/singlecell-parinf

maclean-lab/stemcell-superhero

Interactive cell differentiation model demo

maclean-lab/popInfer

GRN inference with joint scRNA-seq + scATAC-seq data

maclean-lab/model-discovery

maclean-lab/ModelingMDSCs

Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

maclean-lab/scFMC-model

Github repository for "Developmental hematopoietic stem cell fate decisions explain clonal dynamics over lifetime"

maclean-lab/dynamicEMT-genes

maclean-lab/network-logic-EMT

GRN models of EMT to investigate the effects of network logic on multistable phenotypes