Q: HMMRATAC output and options for _summit.bed
kawairine opened this issue · 1 comments
kawairine commented
Hi,
I have the same question as in (#592 (comment))
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and in general, are the columns generated here the same as in the original paper? (https://github.com/LiuLabUB/HMMRATAC/blob/master/HMMRATAC_Guide.md#commandline-options),
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Another question: In the original implementation, there is a Name_summits.bed output, is there a way I can also call summit in your implementation?
Many thanks!
Best,
Kawai
mrendleman commented
For question 1: the columns are mostly the same as the original paper, though I don't think the changes are documented anywhere yet. See this comment for my interpretation of the differences.