madhubioinfo

accessory-old-python-scripts

CFIA-musings

dorado_basecalling_bash

EDGE

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

ISME-reanalysis-of-R.irregularis-mating-loci-

this code was used to reproduce Mateus et al 2020 published in ISME

madhubioinfo.github.io

poresippr_code

Poresippr python code for rapid detection of stx genes from pathogens

madhubioinfo/ISME-reanalysis-of-R.irregularis-mating-loci-

this code was used to reproduce Mateus et al 2020 published in ISME

madhubioinfo/madhubioinfo.github.io

madhubioinfo/poresippr_code

Poresippr python code for rapid detection of stx genes from pathogens

madhubioinfo/accessory-old-python-scripts

madhubioinfo/CFIA-musings

madhubioinfo/dorado_basecalling_bash

madhubioinfo/EDGE

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

madhubioinfo/eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

madhubioinfo/gene_syntenyplot

This python codes, takes the coords from genome and genomic feature and plot the synteny using pygenomeviz

madhubioinfo/genome_comparator

Compare and visualize distances between genomes quickly

madhubioinfo/Geosiphon

This repository contains scripts used for Geosiphon genome analysis

madhubioinfo/misc_python

miscellaneous code for manipulating genetic data

madhubioinfo/pgmtdna

:evergreen_tree: Annotate the mitochondrial genome of white spruce (Picea glauca)

madhubioinfo/Homokaryon-Expression

The discovery and analysis of homokaryon specific expression

madhubioinfo/Nextflow_mapping

This is a repository which contains sample Nextflow Pipeline for educational practise purpose

madhubioinfo/Phd-thesis-of-mine

madhubioinfo/RNAseq_freelance

snakemake workflow and bash scripting for tutoring

madhubioinfo/STLab-assembler

The bash and perl based script takes input as an alignment file of reference and query and produces the reference based chromosome level genome assembly