madisoth
University of Minnesota | Developmental Cognition and Neuroimaging Lab (DCAN) | Masonic Institute for the Developing Brain
Pinned Repositories
3D_MRI_GAN
GAN for image-to-image translation of 3D T1w and T2w anatomical MR images
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
bids_nordic_wrapper
bruker
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
CABINET
cifti-connectivity
Script to generate correlation matrices from BOLD dense or parcellated time series data.
daic2hcp
tool for projecting preprocessed volumetric MR data from the DAIC onto HCP grayordinates
DCAN-HCP
The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Project
dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
dcan-macaque-pipeline
The actual pipeline code, based on hcp, for non-human-primates - sp macaques.
madisoth's Repositories
madisoth/3D_MRI_GAN
GAN for image-to-image translation of 3D T1w and T2w anatomical MR images
madisoth/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
madisoth/bids_nordic_wrapper
madisoth/bruker
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
madisoth/CABINET
madisoth/cifti-connectivity
Script to generate correlation matrices from BOLD dense or parcellated time series data.
madisoth/daic2hcp
tool for projecting preprocessed volumetric MR data from the DAIC onto HCP grayordinates
madisoth/dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
madisoth/dcan-macaque-pipeline
The actual pipeline code, based on hcp, for non-human-primates - sp macaques.
madisoth/dcan_bold_processing
functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines
madisoth/dcan_rtd
madisoth/Dcm2Bids
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
madisoth/Dcm2bids3_NORDIC_wrapper
madisoth/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
madisoth/ExecutiveSummary
quality control images / html viewer for the dcan-fmri-pipelines
madisoth/external-software
Tools needed for the DCAN Labs pipelines that we didn't write.
madisoth/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
madisoth/fmriprep-rodents
fMRIPrep for Rodents
madisoth/HCPpipelines
Processing pipelines for the HCP
madisoth/infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
madisoth/msi_helpers
madisoth/my-first-rtd
A sample repository for use in the BioData Club DIY Documentation Workshop
madisoth/nhp-abcd-bids-pipeline
Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.
madisoth/nibabies
Processing tools for magnetic resonance images of infant brains
madisoth/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
madisoth/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
madisoth/tedana
TE-dependent analysis of multi-echo fMRI
madisoth/templateflow
The Zone of templates
madisoth/xcp_d
post processing of fmriprep , nibabies, hcp and dcan,
madisoth/xcpd_build
Builds a base docker image for xcp-d