Pinned Repositories
BSure
GPseudoClust
Code for the GPseudoClust method, including pre- and postprocessing steps. Magdalena E Strauß, Paul DW Kirk, John E Reid, Lorenz Wernisch (2019); GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.
GPseudoRank
Matlab and Octave code for the GPseudoRank method presented in Magdalena E Strauß, John E Reid, Lorenz Wernisch; GPseudoRank: a permutation sampler for single cell orderings, Bioinformatics, Bioinformatics,35(4), 611–618.
nonparametricSummaryPSM
This R code combines multiple similarity matrices for the same objects using Bayesian nonparametrics, as in Strauß et al. (2019). GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.
analysis_chimera_data
Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease
BE_perturb_seq_drug_resistance
COSICC
COSICC R package
scSNV-seq
magStra's Repositories
magStra/GPseudoRank
Matlab and Octave code for the GPseudoRank method presented in Magdalena E Strauß, John E Reid, Lorenz Wernisch; GPseudoRank: a permutation sampler for single cell orderings, Bioinformatics, Bioinformatics,35(4), 611–618.
magStra/BSure
magStra/GPseudoClust
Code for the GPseudoClust method, including pre- and postprocessing steps. Magdalena E Strauß, Paul DW Kirk, John E Reid, Lorenz Wernisch (2019); GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.
magStra/nonparametricSummaryPSM
This R code combines multiple similarity matrices for the same objects using Bayesian nonparametrics, as in Strauß et al. (2019). GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.