magStra

BSure

GPseudoClust

Code for the GPseudoClust method, including pre- and postprocessing steps. Magdalena E Strauß, Paul DW Kirk, John E Reid, Lorenz Wernisch (2019); GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.

GPseudoRank

Matlab and Octave code for the GPseudoRank method presented in Magdalena E Strauß, John E Reid, Lorenz Wernisch; GPseudoRank: a permutation sampler for single cell orderings, Bioinformatics, Bioinformatics,35(4), 611–618.

nonparametricSummaryPSM

This R code combines multiple similarity matrices for the same objects using Bayesian nonparametrics, as in Strauß et al. (2019). GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.

analysis_chimera_data

Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

BE_perturb_seq_drug_resistance

COSICC

COSICC R package

scSNV-seq

magStra/GPseudoRank

Matlab and Octave code for the GPseudoRank method presented in Magdalena E Strauß, John E Reid, Lorenz Wernisch; GPseudoRank: a permutation sampler for single cell orderings, Bioinformatics, Bioinformatics,35(4), 611–618.

magStra/BSure

magStra/GPseudoClust

Code for the GPseudoClust method, including pre- and postprocessing steps. Magdalena E Strauß, Paul DW Kirk, John E Reid, Lorenz Wernisch (2019); GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.

magStra/nonparametricSummaryPSM

This R code combines multiple similarity matrices for the same objects using Bayesian nonparametrics, as in Strauß et al. (2019). GPseudoClust: deconvolution of shared pseudo-trajectories at single-cell resolution.