Pinned Repositories
ArchR-to-Seurat
A tool which converts an ArchR project to Seurat object.
eQTL-AbO-Conditional-Analysis
This project fine-maps eQTL with All but One conditional analysis. This work is published here: https://doi.org/10.1093/genetics/iyac162
maggiebr0wn
My personal repository
ML-clustering-assignment
Clustering assignments from ML class at GA Tech (CS 7641): implement GMM, Kmeans, and Semisupervised clustering
ML-featureselection-regression
Assignment from ML class at GA Tech (CS 7641): to implement feature selection, PCA, and regression methods.
ML-NNfromscratch
Assignment from ML class at GA Tech (CS 7641): to implement random forest algorithm and build a neural network from scratch.
scMultiome-Crohns-Disease
This project characterizes the multiomic landscape of PBMC in Crohn's disease using scATAC-seq and scRNA-seq data.
scMultiome-TFBS-Analysis
The objective of this pipeline is to identify putative TF regulatory mechanisms focused on differentially accessible genes and differentially accessible chromatin obtained from single cell multiome analysis, with scRNA-seq and scATAC-seq data.
scRNAseq-Analysis-Nasal-Polyps-ASCs
Code for scRNA-seq analysis of antibody secreting cells from patients with chronic rhinosinusitis nasal polyposis. This work is published here: https://doi.org/10.1016/j.mucimm.2023.02.008
snATAC-Express
The objective of this project is to use ATAC-seq data to predict gene expression data, in addition to identify which peaks are most important to accurate gene expression prediction.
maggiebr0wn's Repositories
maggiebr0wn/scMultiome-Crohns-Disease
This project characterizes the multiomic landscape of PBMC in Crohn's disease using scATAC-seq and scRNA-seq data.
maggiebr0wn/scMultiome-TFBS-Analysis
The objective of this pipeline is to identify putative TF regulatory mechanisms focused on differentially accessible genes and differentially accessible chromatin obtained from single cell multiome analysis, with scRNA-seq and scATAC-seq data.
maggiebr0wn/snATAC-Express
The objective of this project is to use ATAC-seq data to predict gene expression data, in addition to identify which peaks are most important to accurate gene expression prediction.
maggiebr0wn/ArchR-to-Seurat
A tool which converts an ArchR project to Seurat object.
maggiebr0wn/eQTL-AbO-Conditional-Analysis
This project fine-maps eQTL with All but One conditional analysis. This work is published here: https://doi.org/10.1093/genetics/iyac162
maggiebr0wn/maggiebr0wn
My personal repository
maggiebr0wn/ML-clustering-assignment
Clustering assignments from ML class at GA Tech (CS 7641): implement GMM, Kmeans, and Semisupervised clustering
maggiebr0wn/ML-featureselection-regression
Assignment from ML class at GA Tech (CS 7641): to implement feature selection, PCA, and regression methods.
maggiebr0wn/ML-NNfromscratch
Assignment from ML class at GA Tech (CS 7641): to implement random forest algorithm and build a neural network from scratch.
maggiebr0wn/scRNAseq-Analysis-Nasal-Polyps-ASCs
Code for scRNA-seq analysis of antibody secreting cells from patients with chronic rhinosinusitis nasal polyposis. This work is published here: https://doi.org/10.1016/j.mucimm.2023.02.008