A library for annotating a protein-protein interaction network using differentially expressed gene information
There are 4 files which are necessary to run this program:
A protein-protein interaction network in the format of:
Entrez ID Entrez ID Confidence score
Such as:
216 216 0.76
3679 1134 0.73
55607 71 0.65
5552 960 0.63
2886 2064 0.9
5058 2064 0.73
1742 2064 0.87
An example of such a network can be found [here](http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/download.php)
An experiment file, in Excel format. Rows show individual entries, columns are the values of the following properties:
- Log2 fold change
- Adjusted p value
- Entrez id
The file may contain other columns too, but the indices and names of the above columns must be entered as parameters