maggishaggy

maggishaggy's Stars

• jdidion/biotools

  A list of useful bioinformatics resources

  589402169

• beast-dev/beast-mcmc

  Bayesian Evolutionary Analysis Sampling Trees

  Language:Java194471.1k73

• fraenkel-lab/OmicsIntegrator2

  Prize-Collecting Steiner Forests for Interactomes

  Language:Jupyter Notebook56106921

• IOR-Bioinformatics/PCSF

  Language:R136611

• laduplessis/skylinetools

  Utilities and distributions for (birth-death) skyline models.

  Language:Java10237

• fraenkel-lab/HD-iPSC-Consortium-NN

  Code and data for the 2017 Nature Neuroscience paper by the HD iPSC Consoritum

  Language:Python6302

• pyelton/Synteny-based-annotator

  This collection of scripts will provide annotations for hypothetical proteins and poorly-annotated prokaryotic genes. If you are a microbiologist with a newly sequenced genome, I highly recommend this script. The citation for the paper on the method development can be found here: Yelton, A.P., Thomas B.C., Simmons, S.L., Wilmes P., Zemla A., Thelen M.P., Justice N., Banfield J.F. A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Computational Biology. In press.

  Language:Ruby5221

• emptyewer/DEEPN

  A Bioinformatics software workflow to process data generated by Illumina next-gen sequencing technique.

  Language:OpenEdge ABL4012

• fraenkel-lab/GarNet

  Language:HTML44412

• fraenkel-lab/PCSF_analysis

  Language:Python3321

• pyelton/genoPlotR-add-ons

  These functions can be used with the genoPlotR R package to add functionality

  Language:R3101

• skinnider/tissue-interactome-app

  Shiny web application for the tissue interactome dataset

  Language:R3301

• cthoyt/flagman

  Perform arbitrary actions on signals.

  Language:Python130

• cthoyt/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python130

• cthoyt/igraph.org

  igraph.org web site

  Language:HTML1

• cthoyt/python-igraph

  Python interface for igraph

  Language:Python130

• cthoyt/pyuniprot

  Python package to query and analyse UniProt

  Language:Python130

• cthoyt/ssbio

  A Python framework for structural systems biology

  Language:Python130

• JKobyP/perm

  Performs permutations tests on PPI networks

  Language:Python1100

• laduplessis/BumblebeeImmuneGenes

  Scripts used for the paper "A depauperate immune repertoire precedes evolution of sociality in bees" (Barribeau, Sadd, du Plessis and many more), Genome Biology (2015). Scripts may need some debugging for use with different gene sets or organisms. No documentation on the scripts available, please get in touch with me if you have questions.

  Language:Python1201

• laduplessis/CrithidiaGenome

  Scripts used to look for signatures of selection in the Crithidia genome using models in codeml

  Language:Python1201

• landml/genome_quality_scores

  Scripts to support the paper 'Quality scores for 32,000 genomes'

  Language:Perl1201

• maggishaggy/Interactome

  maize

  1000

• marieBvr/PVI

  Plant-Virus Interactome

  Language:JavaScript1000

• pasanfernando/Integrative_network_analysis

  The python scripts for the integrative framework that uses PPI and anatomy ontology data to study evolutionary phenotypic transitions

  Language:Python1201

• pyelton/Practical_Machine_Learning

  Course project for Coursera Practical Machine Learning course

  Language:R110

• sevmardi/CycleGAN

  Software that can generate photos from paintings, turn horses into zebras, perform style transfer, and more.

  Language:Lua1200

• sevmardi/mlhacks

  Hacks in Machine Learning

  Language:Jupyter Notebook120

• sevmardi/price-estimation

  Use machine learning predict the value of home prices

  Language:Python11

• TGAC/SalmoNet

  SalmoNet website

  Language:CSS11303