magicDGS/thaplv

Issues

• GetFasta should use the FastaWriter in GATK

  #55 opened 7 years ago
  0

• GetFasta using intervals

  #54 opened 8 years ago
  1

• Improve tests for multi-thread when using heuristic statistics

  #53 opened 8 years ago
  0

• Validate arguments with customCommandLineValidation

  #51 opened 8 years ago
  1

• Extend Main from GATK4 for simplify code

  #50 opened 8 years ago
  2

• Clean implementation of LDdecay

  #47 opened 8 years ago
  0

• LDdecay filter for MAF

  #46 opened 8 years ago
  0

• LDdecay outputs all the SNP pairs computed

  #45 opened 8 years ago
  1

• RunningStats should use exact impementations until a limit is reached

  #43 opened 8 years ago
  0

• Should LengthBinning.formatBins output bins with not data?

  #42 opened 8 years ago
  0

• Synchronization implementations

  #41 opened 8 years ago
  0

• Decide LDdecay default quantiles to compute

  #40 opened 8 years ago
  0

• Binning 0 r correlation issue

  #39 opened 8 years ago
  0

• Change codecov thresholds

  #38 opened 8 years ago
  0

• Change coverage report to Codecov

  #32 opened 8 years ago
  0

• Use VariantWalkerBase in our HaplotypeWalker

  #30 opened 9 years ago
  1

• Implement memoizer for some functions

  #29 opened 9 years ago
  0

• Update GATK4 for new functionality

  #28 opened 9 years ago
  0

• Availables sites computed in PairwiseDifferencesWindow could be wrong

  #26 opened 9 years ago
  0

• Allow selecting/excluding samples from tools

  #25 opened 9 years ago
  0

• Don't include windows with 0 variants at the end of processing in IBDOutput

  #24 opened 9 years ago
  0

• No reference for IBDcompute

  #23 opened 9 years ago
  0

• Port ImputeKNN and finish implementation

  #22 opened 9 years ago
  0

• Port LDdecay

  #21 opened 8 years ago
  0

• Port ReferenceSimilarity

  #20 opened 8 years ago
  2

• GetFasta should/could have an option to include indels

  #17 opened 9 years ago
  0

• Reference methods for distance pairs should be changed

  #16 opened 9 years ago
  0

• Update GATK4 dependency

  #15 opened 9 years ago
  1

• Implement BCI haplotype calling

  #10 opened 9 years ago
  1

• DONT_CHECK HaplotypeModel should be changed for eventual checks and throw error

  #9 opened 8 years ago
  0

• email in LICENSE is wrongly formatted

  #8 opened 9 years ago
  0

• Implement other HaplotypeModels

  #7 opened 9 years ago
  0

• ConvertHaplotypes allele subsetting

  #6 opened 9 years ago
  0